segName='   A'
seq="""
ASP LEU PRO PRO PRO GLU PRO TYR VAL GLN 
THR THR LYS SER TYR PRO SER LYS LEU ALA 
ARG ASN GLU SER ARG GLY SER GLY SER GLY 
SER LEU PHE SER PHE LEU GLY LYS LYS CYS 
VAL THR MET SER SER ALA VAL VAL GLN LEU 
TYR ALA ALA ASP ARG ASN CYS MET TRP SER 
LYS LYS CYS SER GLY VAL ALA CYS LEU VAL 
LYS ASP ASN PRO GLN ARG SER TYR PHE LEU 
ARG ILE PHE ASP ILE LYS ASP GLY LYS LEU 
LEU TRP GLU GLN GLU LEU TYR ASN ASN PHE 
VAL TYR ASN SER PRO ARG GLY TYR PHE HIS 
THR PHE ALA GLY ASP THR CYS GLN VAL ALA 
LEU ASN PHE ALA ASN GLU GLU GLU ALA LYS 
LYS PHE ARG LYS ALA VAL THR ASP LEU LEU 
GLY ARG ARG GLN ARG LYS SER GLU LYS ARG 
ARG ASP
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
