segName='   A'
seq="""
MET ASP GLU THR THR TYR GLU ARG LEU ALA 
GLU GLU THR LEU ASP SER LEU ALA GLU PHE 
PHE GLU ASP LEU ALA ASP LYS PRO TYR THR 
PHE GLU ASP TYR ASP VAL SER PHE GLY SER 
GLY VAL LEU THR VAL LYS LEU GLY GLY ASP 
LEU GLY THR TYR VAL ILE ASN LYS GLN THR 
PRO ASN LYS GLN ILE TRP LEU SER SER PRO 
SER SER GLY PRO LYS ARG TYR ASP TRP THR 
GLY LYS ASN TRP VAL TYR SER HIS ASP GLY 
VAL SER LEU HIS GLU LEU LEU ALA ALA GLU 
LEU THR LYS ALA LEU LYS THR LYS LEU ASP 
LEU SER SER LEU ALA TYR SER GLY LYS ASP 
ALA
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
