segName='   A'
seq="""
MET ASN THR LEU LEU ALA VAL LEU MET LEU 
ALA VAL ALA ALA GLN ALA ARG PRO ASP ALA 
ALA GLY HIS VAL ASN ILE ALA GLU ALA VAL 
GLN GLN LEU ASN HIS THR ILE VAL ASN ALA 
ALA HIS GLU LEU HIS GLU THR LEU GLY LEU 
PRO THR PRO ASP GLU ALA LEU ASN LEU LEU 
THR GLU GLN ALA ASN ALA PHE LYS THR LYS 
ILE ALA GLU VAL THR THR SER LEU LYS GLN 
GLU ALA GLU LYS HIS GLN GLY SER VAL ALA 
GLU GLN LEU ASN ALA PHE ALA ARG ASN LEU 
ASN ASN SER ILE HIS ASP ALA ALA THR SER 
LEU ASN LEU GLN ASP GLN LEU ASN SER LEU 
GLN SER ALA LEU THR ASN VAL GLY HIS GLN 
TRP GLN ASP ILE ALA THR LYS THR GLN ALA 
SER ALA GLN GLU ALA TRP ALA PRO VAL GLN 
SER ALA LEU GLN GLU ALA ALA GLU LYS THR 
LYS GLU ALA ALA ALA ASN LEU GLN ASN SER 
ILE GLN SER ALA VAL GLN LYS PRO ALA ASN 
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
