segName='   A'
seq="""
MET GLN ASP TRP ALA THR PHE LYS LYS LYS 
HIS LEU THR ASP THR TRP ASP VAL ASP CYS 
ASP ASN LEU MET PRO THR SER LEU PHE ASP 
CYS LYS ASP LYS ASN THR PHE ILE TYR SER 
LEU PRO GLY PRO VAL LYS ALA LEU CYS ARG 
GLY VAL ILE PHE SER ALA ASP VAL LEU SER 
ASN SER GLU PHE TYR LEU ALA GLU CYS ASN 
VAL LYS PRO ARG LYS PRO CYS LYS TYR LYS 
LEU LYS LYS SER SER ASN ARG ILE CYS ILE 
ARG CYS GLU HIS GLU LEU PRO VAL HIS PHE 
ALA GLY VAL GLY ILE CYS PRO
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
