segName='   A'
seq="""
GLY SER THR MET GLU VAL ALA MET VAL SER 
ALA GLU SER SER GLY CYS ASN SER HIS MET 
PRO TYR GLY TYR ALA ALA GLN ALA ARG ALA 
ARG GLU ARG GLU ARG LEU ALA HIS SER ARG 
ALA ALA ALA ALA ALA ALA VAL ALA ALA ALA 
THR ALA ALA VAL GLU GLY THR GLY GLY SER 
GLY GLY GLY PRO HIS HIS HIS HIS GLN THR 
ARG GLY ALA TYR SER SER HIS ASP
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
