segName='   A'
seq="""
MET GLY SER SER HIS HIS HIS HIS HIS HIS 
SER SER GLY LEU VAL PRO ARG GLY SER HIS 
MET ASN THR SER SER LEU GLU THR ILE GLU 
GLY VAL GLY PRO LYS ARG ARG GLN MET LEU 
LEU LYS TYR MET GLY GLY LEU GLN GLY LEU 
ARG ASN ALA SER VAL GLU GLU ILE ALA LYS 
VAL PRO GLY ILE SER GLN GLY LEU ALA GLU 
LYS ILE PHE TRP SER LEU LYS HIS
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
