segName='   A'
seq="""
MET LEU VAL ALA ASN ILE ASN GLY GLY PHE 
GLU SER THR PRO ALA GLY VAL VAL THR ASP 
LEU ALA GLU GLY VAL GLU GLY TRP ASP LEU 
ASN VAL GLY SER SER VAL THR ASN PRO PRO 
VAL PHE GLU VAL LEU GLU THR SER ASP ALA 
PRO GLU GLY ASN LYS VAL LEU ALA VAL THR 
VAL ASN GLY VAL GLY ASN ASN PRO TRP ASP 
ILE GLU ALA THR ALA PHE PRO VAL ASN VAL 
ARG PRO GLY VAL THR TYR THR TYR THR ILE 
TRP ALA ARG ALA GLU GLN ASP GLY ALA VAL 
VAL SER PHE THR VAL GLY ASN GLN SER PHE 
GLN GLU TYR GLY ARG LEU HIS GLU GLN GLN 
ILE THR THR GLU TRP GLN PRO PHE THR PHE 
GLU PHE THR VAL SER ASP GLN GLU THR VAL 
ILE ARG ALA PRO ILE HIS PHE GLY TYR ALA 
ALA ASN VAL GLY ASN THR ILE TYR ILE ASP 
GLY LEU ALA ILE ALA SER GLN PRO
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
