segName='   A'
seq="""
MET LYS VAL PRO PRO HIS SER ILE GLU ALA 
GLU GLN SER VAL LEU GLY GLY LEU MET LEU 
ASP ASN GLU ARG TRP ASP ASP VAL ALA GLU 
ARG VAL VAL ALA ASP ASP PHE TYR THR ARG 
PRO HIS ARG HIS ILE PHE THR GLU MET ALA 
ARG LEU GLN GLU SER GLY SER PRO ILE ASP 
LEU ILE THR LEU ALA GLU SER LEU GLU ARG 
GLN GLY GLN LEU ASP SER VAL GLY GLY PHE 
ALA TYR LEU ALA GLU LEU SER LYS ASN THR 
PRO SER ALA ALA ASN ILE SER ALA TYR ALA 
ASP ILE VAL ARG GLU ARG ALA VAL VAL ARG 
GLU MET ILE SER
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
