segName='   A'
seq="""
MET LYS GLY PHE GLU PHE PHE ASP VAL THR 
ALA ASP ALA GLY PHE TRP ALA TYR GLY HIS 
ASP LEU GLU GLU VAL PHE GLU ASN ALA ALA 
LEU ALA MET PHE GLU VAL MET THR ASP THR 
SER LEU VAL GLU ALA ALA GLU GLU ARG ARG 
VAL GLU ILE THR SER GLU ASP ARG VAL SER 
LEU LEU TYR ASP TRP LEU ASP GLU LEU LEU 
PHE ILE HIS ASP THR GLU PHE ILE LEU PHE 
SER LYS PHE LYS VAL LYS ILE ASP GLU LYS 
ASP ASP GLY LEU HIS LEU THR GLY THR ALA 
MET GLY GLU GLU ILE LYS GLU GLY HIS GLU 
ARG ARG ASP GLU VAL LYS ALA VAL THR PHE 
HIS MET MET GLU ILE LEU ASP GLU ASP GLY 
LEU ILE LYS ALA ARG VAL ILE LEU ASP LEU 
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
