segName='   A'
seq="""
MET GLY GLN GLN PHE SER TRP GLU GLU ALA 
GLU GLU ASN GLY ALA VAL GLY ALA ALA ASP 
ALA ALA GLN LEU GLN GLU TRP TYR LYS LYS 
PHE LEU GLU GLU CYS PRO SER GLY THR LEU 
PHE MET HIS GLU PHE LYS ARG PHE PHE LYS 
VAL PRO ASP ASN GLU GLU ALA THR GLN TYR 
VAL GLU ALA MET PHE ARG ALA PHE ASP THR 
ASN GLY ASP ASN THR ILE ASP PHE LEU GLU 
TYR VAL ALA ALA LEU ASN LEU VAL LEU ARG 
GLY THR LEU GLU HIS LYS LEU LYS TRP THR 
PHE LYS ILE TYR ASP LYS ASP ARG ASN GLY 
CYS ILE ASP ARG GLN GLU LEU LEU ASP ILE 
VAL GLU SER ILE TYR LYS LEU LYS LYS ALA 
CYS SER VAL GLU VAL GLU ALA GLU GLN GLN 
GLY LYS LEU LEU THR PRO GLU GLU VAL VAL 
ASP ARG ILE PHE LEU LEU VAL ASP GLU ASN 
GLY ASP GLY GLN LEU SER LEU ASN GLU PHE 
VAL GLU GLY ALA ARG ARG ASP LYS TRP VAL 
MET LYS MET LEU GLN MET ASP LEU ASN PRO 
SER SER TRP ILE SER GLN GLN ARG ARG LYS 
SER ALA MET PHE
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
