segName='   A'
seq="""
LEU PHE ILE ALA THR LEU LYS GLY ILE PHE 
THR LEU LYS ASP LEU PRO GLU GLU PHE ARG 
PRO PHE VAL ASP TYR LYS ALA GLY LEU GLU 
LYS LYS LYS LEU SER ASP ASP ASP GLU ILE 
ALA ILE ILE SER ILE LYS GLY THR GLN SER 
ASN HIS VAL LEU PHE LEU SER SER TYR ASN 
SER VAL ASP GLU ILE ARG LYS GLU LEU GLU 
GLU ALA GLY ALA LYS ILE ASN HIS THR THR 
LEU LYS ILE LEU GLU GLY HIS LEU
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
