segName='   A'
seq="""
GLY SER HIS MET LYS MET GLY VAL LYS GLU 
ASP ILE ARG GLY GLN ILE ILE GLY ALA LEU 
ALA GLY ALA ASP PHE PRO ILE ASN SER PRO 
GLU GLU LEU MET ALA ALA LEU PRO ASN GLY 
PRO ASP THR THR CYS LYS SER GLY ASP VAL 
GLU LEU LYS ALA SER ASP ALA GLY GLN VAL 
LEU THR ALA ASP ASP PHE PRO PHE LYS SER 
ALA GLU GLU VAL ALA ASP THR ILE VAL ASN 
LYS ALA GLY LEU
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
