segName='   A'
seq="""
GLY ASP VAL GLU LYS GLY LYS LYS ILE PHE 
VAL GLN LYS CYS ALA GLN CYS HIS THR VAL 
GLU LYS GLY GLY LYS HIS LYS THR GLY PRO 
ASN LEU HIS GLY LEU PHE GLY ARG LYS THR 
GLY GLN ALA PRO GLY PHE THR TYR THR ASP 
ALA ASN LYS ASN LYS GLY ILE THR TRP LYS 
GLU GLU THR LEU MET GLU TYR LEU GLU ASN 
PRO LYS LYS TYR ILE PRO GLY THR LYS MET 
ILE PHE ALA GLY ILE LYS LYS LYS THR GLU 
ARG GLU ASP LEU ILE ALA TYR LEU LYS LYS 
ALA THR ASN GLU
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
