segName='   A'
seq="""
GLY PRO LEU GLY SER ALA ALA ALA ALA THR 
PRO ALA VAL ARG THR VAL PRO GLN TYR LYS 
TYR ALA ALA GLY VAL ARG ASN PRO GLN GLN 
HIS LEU ASN ALA GLN PRO GLN VAL THR MET 
GLN GLN PRO ALA VAL HIS VAL GLN GLY GLN 
GLU PRO LEU THR ALA SER MET LEU ALA SER 
ALA PRO PRO GLN GLU GLN LYS GLN MET LEU 
GLY GLU ARG LEU PHE PRO LEU ILE GLN ALA 
MET HIS PRO THR LEU ALA GLY LYS ILE THR 
GLY MET LEU LEU GLU ILE ASP ASN SER GLU 
LEU LEU HIS MET LEU GLU SER PRO GLU SER 
LEU ARG SER LYS VAL ASP GLU ALA VAL ALA 
VAL LEU GLN ALA HIS GLN ALA LYS GLU ALA 
ALA GLN LYS ALA VAL ASN SER ALA THR GLY 
VAL PRO THR VAL
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
