segName='   A'
seq="""
MET THR THR GLU ALA ALA PRO ASN LEU LEU 
VAL LEU THR ARG HIS GLY GLU SER GLU TRP 
ASN LYS LEU ASN LEU PHE THR GLY TRP LYS 
ASP PRO ALA LEU SER GLU THR GLY ILE LYS 
GLU ALA LYS LEU GLY GLY GLU ARG LEU LYS 
SER ARG GLY TYR LYS PHE ASP ILE ALA PHE 
THR SER ALA LEU GLN ARG ALA GLN LYS THR 
CYS GLN ILE ILE LEU GLU GLU VAL GLY GLU 
PRO ASN LEU GLU THR ILE LYS SER GLU LYS 
LEU ASN GLU ARG TYR TYR GLY ASP LEU GLN 
GLY LEU ASN LYS ASP ASP ALA ARG LYS LYS 
TRP GLY ALA GLU GLN VAL GLN ILE TRP ARG 
ARG SER TYR ASP ILE ALA PRO PRO ASN GLY 
GLU SER LEU LYS ASP THR ALA GLU ARG VAL 
LEU PRO TYR TYR LYS SER THR ILE VAL PRO 
HIS ILE LEU LYS GLY GLU LYS VAL LEU ILE 
ALA ALA HIS GLY ASN SER LEU ARG ALA LEU 
ILE MET ASP LEU GLU GLY LEU THR GLY ASP 
GLN ILE VAL LYS ARG GLU LEU ALA THR GLY 
VAL PRO ILE VAL TYR HIS LEU ASP LYS ASP 
GLY LYS TYR VAL SER LYS GLU LEU ILE ASP 
ASN
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
