segName='   A'
seq="""
MET CYS ASP ARG LYS ALA VAL ILE LYS ASN 
ALA ASP MET SER GLU GLU MET GLN GLN ASP 
SER VAL GLU CYS ALA THR GLN ALA LEU GLU 
LYS TYR ASN ILE GLU LYS ASP ILE ALA ALA 
HIS ILE LYS LYS GLU PHE ASP LYS LYS TYR 
ASN PRO THR TRP HIS CYS ILE VAL GLY ARG 
ASN PHE GLY SER TYR VAL THR HIS GLU THR 
LYS HIS PHE ILE TYR PHE TYR LEU GLY GLN 
VAL ALA ILE LEU LEU PHE LYS SER GLY
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
