segName='   A'
seq="""
THR GLY CYS SER VAL THR ALA THR ARG ALA 
GLU GLU TRP SER ASP GLY PHE ASN VAL THR 
TYR SER VAL SER GLY SER SER ALA TRP THR 
VAL ASN LEU ALA LEU ASN GLY SER GLN THR 
ILE GLN ALA SER TRP ASN ALA ASN VAL THR 
GLY SER GLY SER THR ARG THR VAL THR PRO 
ASN GLY SER GLY ASN THR PHE GLY VAL THR 
VAL MET LYS ASN GLY SER SER THR THR PRO 
ALA ALA THR CYS ALA GLY SER
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
