segName='   B'
seq="""
MET HIS HIS HIS HIS HIS HIS LEU GLU PRO 
ASP ASN VAL PRO MET ASP MET SER PRO LYS 
ALA LEU GLN GLN LYS ILE HIS GLU LEU GLU 
GLY LEU MET MET GLN HIS ALA GLN ASN LEU 
GLU PHE GLU GLU ALA ALA GLN ILE ARG ASP 
GLN LEU HIS GLN LEU ARG GLU LEU PHE ILE 
ALA ALA SER
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
